PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g12120.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family E2F/DP
Protein Properties Length: 238aa    MW: 25714.4 Da    PI: 5.4504
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g12120.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP26.21.3e-0879118338
                         E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse......d 38 
                                     +++Lr++++k   ++ek+e+ g++t+neva+eLv+e      +
  Zjn_sc00003.1.g12120.1.sm.mkhc  79 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpnnN 118
                                     689*******...*****999*************997766541 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.1E-1973131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013720.001577203IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.9E-680113IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440741.33E-6144168No hitNo description
PfamPF087815.9E-6144169IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVSGSPSSRS EQHAPDGAGK GPAVAAPGPS ASASTPVSES TFLRLNTLDI NGDDAPSSQA  60
STSKKKKRGS RAAGPDKGNR GLRQFSMKVC EKVESKGRTT YNEVADELVA EFSDPNNNIE  120
APDPDNPNAV KKYDLSLAPE LQDQTRPHAT VEVEISEDMQ LVHFDFNRTE KAEPSADAPE  180
SWRSTTSTGI MPRRARETVQ NEGFLLLDST SKERTSRRVD RSAPLGVFPV DRLCMLAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-1671134166PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169170.11e-64uncharacterized protein LOC100383020
SwissprotQ9FNY25e-37DPB_ARATH; Transcription factor-like protein DPB
TrEMBLC0PCD81e-64C0PCD8_MAIZE; Uncharacterized protein
STRINGGRMZM2G063387_P014e-64(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.17e-38Transcription factor DP